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Never buy bagels from the store again! These 5-ingredient high protein bagels are super simple to make at home and the flavor options are endless. You’re going to love these. 

Bagels are a popular breakfast carb but they were likely one of the first foods on the chopping block when trying to make healthier choices at breakfast – but not anymore! These delicious 5-ingredient high protein bagels are lower in calories and carbs than most store-bought bagels while also packed with 10 grams of protein. (No protein powder needed!)

Women need more protein as they age, and this is a simple way to up your intake!

What’s more, this easy protein bagel recipe is much simpler to make than a traditional bagel recipe since there’s no yeast (no waiting for them to rise) and you can skip the boiling step.

Like other homemade bagel recipes, these can also be made with a ton of different flavorings, although everything bagel is my favorite. 

Looking for more low calorie breakfast ideas? Check out my full list of healthy breakfast recipes!

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Ingredients for Greek Yogurt Protein Bagels

Use these simple 5 ingredients to make a healthier version of your favorite breakfast carb.

raw ingredients on counter to make high protein bagel recipe
  • Whole wheat flour: I love the nutty flavor that whole wheat flour gives these bagels. You can also use all-purpose flour for a fluffier bagel. Many high protein bagel recipes call for self-rising flour, but I don’t usually have that in my pantry. Whole wheat flour works just as well when paired with some baking powder.  
  • Baking powder: adds lift and lightness to these bagels. 
  • Sea salt: just a bit of salt gives these bagels more flavor.
  • Greek yogurt (regular, full fat, or non-fat): instead of oil or water, we’re adding protein and moisture to these bagels by using Greek yogurt. Just make sure to pick up an unflavored and unsweetened one for best results. The type of Greek yogurt you use (regular, full fat, non-fat) doesn’t really change the flavor of the bagels other than saving you a few calories and a bit of saturated fat. 
  • Egg white (optional): whisk an egg white and brush on top of the bagels before baking for a nice golden brown and shiny top OR to help any seasonings like everything bagel stick. You can omit the egg wash if you want to make these egg free. 
  • Everything bagel seasoning: a classic seasoning for bagels that works well for this healthy bagel recipe too. 

Variations

Use these variations to customize this healthy bagel recipe to your personal preference.

Use Cottage Cheese: you can also make healthy protein bagels with cottage cheese instead of the greek yogurt. Instead of 1 cup of greek yogurt, use 1 cup of cottage cheese – just blend until smooth in a small blender before adding it to the batter. 

Make them Gluten Free: these can easily be made gluten free by using a good 1-to-1 gluten free flour blend in place of the whole wheat flour. 

Try different flavors: add cinnamon and raisins to the bagel dough, sprinkle with sesame seeds or poppy seeds, mix in some herbs and garlic, or try adding some shredded cheese or parmesan to the top of the bagels before baking. 

How Much Protein is in a Bagel?

These healthy protein bagels have 10 grams of protein per bagel, which is actually about the same protein content as a standard bagel from the grocery store. However, these homemade bagels are much lower in calories (by at least 100 calories) and carbohydrates.

How to Make High Protein Bagels

This healthy protein bagel recipe is simple to put together in a few steps. 

Preheat the oven: Preheat oven to 375 and get your baking sheet ready (either lined with parchment or use a Silpat mat).

Make the Batter: In a medium bowl combine the dry ingredients (flour, baking powder, salt) and mix well. Add the yogurt and mix until well combined and dough forms.

mixing dough for high protein bagel

Knead and Shape: On a wooden board or clean countertop, lightly dust with flour; place dough onto the board and knead the dough a few times until dough is tacky, but not sticky.

bagel dough divided into four portions

Divide the dough into 4 equal portions; roll each into a ball and then use your thumb to make a hole through the center of the dough and shape with your fingers to form a bagel shape.

healthy bagels prepped to bake on baking sheet

Bake: Top with egg wash (and with toppings if using) and bake on the top rack of the oven for 20-25 minutes. Let cool for at least 15 minutes before cutting. If using, sprinkle with seasoning of your choice. Serve with your favorite spread like cream cheese or peanut butter (for plain or cinnamon raisin versions). 

Air fryer: instead of baking in the oven, you can also air fry these bagels. Just preheat the air fryer to 300 degrees fahrenheit and spray the basket with cooking spray or line with parchment paper. Air fry in batches, 2 bagels at a time, for 15-17 minutes until golden brown.

healthy protein bagels ready to eat on baking sheet

Tools You’ll Need

Are Protein Bagels Healthy?

Yes, these Greek yogurt bagels can be a great addition to your diet! They are lower in calories and carbohydrates than a standard bagel from the grocery store – but provide 10 grams of protein.

If you are trying to hit your protein goals, you can make a protein-packed breakfast by pairing one of these bagels with some eggs, a protein smoothie, or a bowl of Greek yogurt and fruit. 

Storage

Extra bagels can be stored in an airtight container or ziplock bag on the counter for 1 day; or store them in the refrigerator for up to 3 days. Reheat in the toaster to serve. You can also freeze them in a freezer safe container for up to 3 months. 

If you like to meal prep, you can make the dough and store it in the fridge in a bowl covered tightly with plastic wrap. You can then bake them off throughout the week, one or two bagels at a time. Just divide the dough, let it warm to room temperature, shape, and bake. 

5-Ingredient High Protein Bagels

Never buy bagels from the store again! These 5-ingredient high protein bagels are super simple to make at home and the flavor options are endless. You’re going to love these.
Prep Time: 10 minutes
Cook Time: 25 minutes
Total Time: 35 minutes
Servings: 4 bagels
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Equipment

  • Mixing bowl
  • Measuring cups
  • Baking sheet
  • Parchment paper

Ingredients 

  • 1 ¼ cup all purpose flour or whole wheat flour
  • 1 ½ teaspoons baking powder
  • ½ teaspoon sea salt
  • 1 cup Greek yogurt, can be regular, full fat or non-fat see note if using regular yogurt
  • 1 egg white
  • Everything bagel seasoning, optional

Instructions 

  • Preheat the oven to 375 degrees Fahrenheit and get your baking sheet ready (either lined with parchment paper or use a Silpat mat).
  • In a medium bowl combine the flour, baking powder and salt and mix well. Add the yogurt and mix until well combined and dough forms.
  • On a wooden board or clean countertop, lightly dust with flour; place dough onto the board and knead the dough a few times until dough is tacky, but not sticky.
  • Divide the dough into 4 equal portions; roll each into a ball and then use your thumb to make a hole through the center of the dough and shape with your fingers to form a bagel shape.
  • Top with egg wash (and with toppings if using) and bake on the top rack of the oven for 20-25 minutes depending. Let cool for at least 15 minutes before cutting.

Air Fryer Instructions

  • Instead of baking in the oven, you can also air fry these bagels. Just preheat the air fryer to 300 degrees fahrenheit and spray the basket with cooking spray or line with parchment paper. Air fry in batches, 2 bagels at a time, for 15-17 minutes until golden brown.

Nutrition

Serving: 1bagel | Calories: 175kcal | Carbohydrates: 32g | Protein: 10g | Fat: 1g | Fiber: 1g | Sugar: 2g
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